.. _links:

Useful links
============

In this section we gathered all the links that are related to ``pergola``. Our GitHub and DockerHub repositories,
webserver and any other information we might find relevant for the user

.. contents::

|

.. image:: ./images/pergola_logo.png
   :align: right
   :alt: Go to pergola server
   :target: http://pergola.crg.eu

----------
Web server
----------

On our `web server <http://pergola.crg.eu>`_ you can use main ``pergola`` functionalities in a user-friendly interface.

|

.. image:: ./images/github_wiki_small.png
   :align: right
   :scale: 80 %
   :alt: Go to GitHub
   :target: https://github.com/

-------
GitHub
-------

* Main `GitHub repository <https://github.com/cbcrg/pergola>`_ where you can find latest Pergola code and you can also
  clone the repository if you want to contribute to the project.

* `shiny-pergola <https://github.com/JoseEspinosa/shinyPergola>`_ repository, a Shiny app for the visualization of
  longitudinal behavioral data processed using ``pergola``

* `Repository <https://github.com/cbcrg/pergola-reproduce>`_ wrapping the analysis performed for ``pergola`` publication
  (submitted).

* `Code <https://github.com/cbcrg/celegans-pergola-reproduce>`_ to reproduce *C. elegans* analysis of ``pergola`` paper.

* `Pipeline <https://github.com/cbcrg/melanogaster-pergola-reproduce>`_ to reproduce *D. melanogaster* analysis of
  ``pergola`` paper.

* `Repository <https://github.com/cbcrg/mouse-pergola-reproduce>`_ to reproduce *M. musculus* analysis of ``pergola``
  paper.

|

.. image:: ./images/docker_wiki_small.png
   :align: right
   :alt: Go to Docker
   :target: https://hub.docker.com/

----------
Docker Hub
----------

* Docker image with last ``pergola`` release can be found in our Docker Hub
  `repository <https://hub.docker.com/r/pergola/pergola/>`_.

* Docker image with last ``shiny-pergola`` release can be found in our Docker Hub
  `here <https://hub.docker.com/r/pergola/shiny-pergola/>`_.

|

.. image:: ./images/Zenodo_logo_wiki_small.jpg
   :align: right
   :alt: Go to Zenodo
   :target: https://zenodo.org/

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Zenodo
-------

|

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1164178.svg
     :align: left
     :alt: pergola release
     :target: https://doi.org/10.5281/zenodo.1164178

DOI to the latest release of ``pergola``.

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.838236.svg
   :align: left
   :alt: data sample
   :target: https://doi.org/10.5281/zenodo.838236

Data sample to run examples in the :ref:`ready-to-use scripts<scripts-page>` section

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1068506.svg
   :align: left
   :alt: pipeline worms
   :target: https://doi.org/10.5281/zenodo.1068506

DOI to the analysis pipeline used for the *C. elegans* analysis of ``pergola`` paper.

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1068334.svg
   :align: left
   :alt: pipeline flies
   :target: https://doi.org/10.5281/zenodo.1068334

DOI to the analysis pipeline used for the *D. melanogaster* analysis of ``pergola`` paper.

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1101066.svg
   :align: left
   :alt: pipeline mice
   :target: https://doi.org/10.5281/zenodo.1101066

DOI to the data set used for the *C. elegans* analysis of ``pergola`` paper.

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1067835.svg
   :align: left
   :alt: data flies
   :target: https://doi.org/10.5281/zenodo.1067835

DOI to the data set pipeline used for the *D. melanogaster* analysis of ``pergola`` paper.

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1154827.svg
   :align: left
   :alt: data mice
   :target: https://doi.org/10.5281/zenodo.1154827

DOI to the data set pipeline used for the *M. musculus* analysis of ``pergola`` paper.